Algorithms for Molecular Biology

Table 5 Length 600 simulation accuracy percentages

From: Invariant based quartet puzzling

	Molecular Clock				No Molecular Clock
	AA	BB	AB	AVG	CC	DD	CD	AVG
M=0.1 BSI-JC	36	40	37	38	50	45	49	48
M=0.1 K2P	28	35	30	31	47	44	44	45
M=0.1 ML	17	29	21	22	29	28	27	28
M=0.3 BSI-JC	57	66	63	62	77	80	80	79
M=0.3 K2P	33	57	43	44	70	69	69	69
M=0.3 ML	48	61	54	54	74	79	78	77
M=1.0 BSI-JC	23	41	29	31	70	71	68	70
M=1.0 K2P	9	36	16	20	32	36	36	35
M=1.0 ML	21	43	26	30	76	84	79	80
M=2.0 BSI-JC	0	2	0	1	2	5	2	3
M=2.0 K2P	0	4	1	2	0	0	0	0
M=2.0 ML	0	1	0	1	24	36	30	30

Comparison of the percentage of reconstructed trees that match the correct tree using Biologically Symmetric Invariants (BSI) and Kimura 2 parameter invariants (K2P) versus Maximum Likelihood (ML) for sequences of length 600.

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ISSN: 1748-7188

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