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Table 5 Length 600 simulation accuracy percentages

From: Invariant based quartet puzzling

  Molecular Clock No Molecular Clock
  AA BB AB AVG CC DD CD AVG
M=0.1 BSI-JC 36 40 37 38 50 45 49 48
M=0.1 K2P 28 35 30 31 47 44 44 45
M=0.1 ML 17 29 21 22 29 28 27 28
M=0.3 BSI-JC 57 66 63 62 77 80 80 79
M=0.3 K2P 33 57 43 44 70 69 69 69
M=0.3 ML 48 61 54 54 74 79 78 77
M=1.0 BSI-JC 23 41 29 31 70 71 68 70
M=1.0 K2P 9 36 16 20 32 36 36 35
M=1.0 ML 21 43 26 30 76 84 79 80
M=2.0 BSI-JC 0 2 0 1 2 5 2 3
M=2.0 K2P 0 4 1 2 0 0 0 0
M=2.0 ML 0 1 0 1 24 36 30 30
  1. Comparison of the percentage of reconstructed trees that match the correct tree using Biologically Symmetric Invariants (BSI) and Kimura 2 parameter invariants (K2P) versus Maximum Likelihood (ML) for sequences of length 600.