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Table 6 Length 600 simulation Robinson-Foulds distances

From: Invariant based quartet puzzling

  Molecular Clock No Molecular Clock
  AA BB AB AVG CC DD CD AVG
M=0.1 BSI-JC 1.9 1.7 1.9 1.8 1.4 1.6 1.5 1.5
M=0.1 K2P 2.4 2.1 2.6 2.3 1.6 1.7 1.7 1.6
M=0.1 ML 1.9 1.5 1.7 1.7 1.4 1.5 1.5 1.5
M=0.3 BSI-JC 1.0 0.8 0.9 0.9 0.5 0.5 0.5 0.5
M=0.3 K2P 1.9 1.2 1.6 1.5 .7 .7 .7 .7
M=0.3 ML 0.8 0.6 0.7 0.7 0.4 0.3 0.3 0.3
M=1.0 BSI-JC 2.3 1.7 2.3 2.1 0.7 0.7 0.8 0.7
M=1.0 K2P 3.6 2.2 3.0 2.9 2.2 2.0 2.0 2.1
M=1.0 ML 1.8 1.0 1.5 1.4 0.4 0.3 0.3 0.3
M=2.0 BSI-JC 6.7 7.8 7.6 7.4 7.4 6.9 7.2 7.2
M=2.0 K2P 6.3 7.0 6.8 6.7 11.6 11.8 11.8 11.7
M=2.0 ML 4.4 3.8 4.3 4.2 1.7 1.4 1.6 1.6
  1. Comparison of the average Robinson-Foulds distance between the reconstructed tree and the correct tree for sequences of length 600.