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Table 2 Permutations on SSEs direction labels based on 90 degree rotation around axes

From: TS-AMIR: a topology string alignment method for intensive rapid protein structure comparison

 

Strand

Helix

Inter-SSEs

Old

A B C D E F G H

I J K L M N O P

Q R S T U V W X

Rotate 90° around x

B D A C F H E G

J L I K N P M O

R T Q S V X U W

Rotate 90° around y

E A G C F B H D

M I O K N J P L

U Q W S V R X T

Rotate 90° around z

E F A B G H C D

M N I J O P K L

U V Q R W X S T

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Algorithms for Molecular Biology

ISSN: 1748-7188