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Table 5 Alignment results summary for 200 non-homologous proteins averaged over all structure pairs

From: TS-AMIR: a topology string alignment method for intensive rapid protein structure comparison

 

Length of alignment

Coverage

RMSD

(Ã…)

TMscore

CE

64.3

34.7%

6.52

0.169

TM-Align

87.4

42.0%

4.99

0.253

3D-BLAST

65.7

36.2%

6.69

0.172

TS-AMIR

91.4

46.6%

6.17

0.237

  1. - The results of CE and TM-Align were taken from [7].
  2. - Coverage denotes fraction of residues aligned within the target protein.
  3. - Length of alignment denotes number of aligned residues
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Algorithms for Molecular Biology

ISSN: 1748-7188