Reconciliation and local gene tree rearrangement can be of mutual profit

Table 3 The robustness of MowgliNNI to changes in event costs with respect to the initial ones computed by Formula ( 1) (Column 1)

Event cost variation	RF	FP Dup	FP Tran	FP Loss	FN Dup	FN Tran	FN Loss
0%	12.8	14.1	69.9	14.9	12.8	42.5	16.2
10%	12.9	14.3	72.1	16.4	13.0	45.0	17.6
20%	12.9	14.4	71.1	16.8	13.2	44.2	17.7
50%	12.9	14.6	74.1	17.8	15.0	45.6	18.9

Error terms (in %) are the Robinson Foulds distances (RF) as well as the false positive (FP), and false negative (FN) for the various event predicted. Non-negligible variations in event costs result in small variations of the error terms (transfers being the most affected).

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