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Table 1 E. coli motifs

From: MCOIN: a novel heuristic for determining transcription factor binding site motif width

High conservation Low conservation
Name w N Name w N
Ada 13 4 ArgR 18 35
CaiF 16 8 DeoR 16 7
CueR 19 3 FruR 18 18
IlvY 21 4 Fur 19 99
LacI 21 3 GntR 20 17
MalI 12 2 MalT 10 20
MelR 18 11 Nac 15 18
MetR 13 7 RcsB 14 11
PurR 16 20    
SoxR 19 2    
TorR 10 10    
XylR 18 4    
  1. Summary of knownE. coli TFBS motifs used in tests with real data. For each motif, transcription factor name is given, along with known width (wx, bp) and number of motif occurrences (N).