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Table 1 E. coli motifs

From: MCOIN: a novel heuristic for determining transcription factor binding site motif width

High conservation

Low conservation

Name

w ∗

N

Name

w ∗

N

Ada

13

4

ArgR

18

35

CaiF

16

8

DeoR

16

7

CueR

19

3

FruR

18

18

IlvY

21

4

Fur

19

99

LacI

21

3

GntR

20

17

MalI

12

2

MalT

10

20

MelR

18

11

Nac

15

18

MetR

13

7

RcsB

14

11

PurR

16

20

   

SoxR

19

2

   

TorR

10

10

   

XylR

18

4

   
  1. Summary of knownE. coli TFBS motifs used in tests with real data. For each motif, transcription factor name is given, along with known width (wx∗, bp) and number of motif occurrences (N).
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Algorithms for Molecular Biology

ISSN: 1748-7188