Algorithms for Molecular Biology

Table 2 Prokaryotic ChIP motifs

From: MCOIN: a novel heuristic for determining transcription factor binding site motif width

Species	Name	w ^∗	N
E. coli	CRP	22	34
E. coli	LexA	20	25
E. coli	PurR	16	28
E. coli	RutR	16	19
V. cholerae	Fur	21	55
V. cholerae	RpoN	15	37
M. tuberculosis	DosR	18	24
M. tuberculosis	LexA	18	23
*B. subtilis*	Spo0A	12	94

Summary of known prokaryotic TFBS motifs used in tests with real data. For each motif, the species and transcription factor name is given, along with known width (w^∗, bp) and number of motif occurrences (N).

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ISSN: 1748-7188

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