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Table 9 Prokaryotic ChIP data: classification-based results

From: MCOIN: a novel heuristic for determining transcription factor binding site motif width

Conservation

Known width (w∗)

MCOIN (w∗ ± 4)

E-values (w∗ ± 4)

(mean bits/col)

sSn

sPPV

AUC

sSn

sPPV

AUC

sSn

sPPV

AUC

0.99

0.75

0.67

0.99

0.75

0.68

0.99

0.73

0.67

0.99

  1. Mean site-level sensitivity (sSn), positive predictive value (sPPV) and area under the ROC curve (AUC) for 9 datasets created using real prokaryotic data determined through ChIP experiments. The datasets used are summarised in Table 2.
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Algorithms for Molecular Biology

ISSN: 1748-7188