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Table 6 Simulated test results for SibJoin and COLONY 2.0 averaged over 10trials

From: Fast half-sibling population reconstruction: theory and algorithms

Fixed Parameter   SibJoin   COLONY 2.0
parameter settings Runtime VI (normalized) Runtime VI (normalized)
  2 2.8 ms 0.396 48.9 min 0.553
  5 13.2 ms 0.222 19.7 min 0.110
k: number of alleles 10 6.7 ms 0.014 12.8 min 0.004
  15 5.1 ms 0.014 10.2 min 0.006
  20 5.7 ms 0.003 10.0 min 0.000
  2 8.7 ms 0.469 10.7 min 0.524
  5 10.1 ms 0.156 17.2 min 0.130
m: number of loci 10 11.1 ms 0.035 14.2 min 0.001
  15 12.7 ms 0.002 20.4 min 0.000
  20 12.1 ms 0.000 21.3 min 0.000
  10 0.4 ms 0.042 2.29 min 0.343
n: population size 50 16.8 ms 0.104 17.1 min 0.078
100 82.5 ms 0.201 73.5 min 0.086
  200 3.31 sec 0.230 - -
  500 34.68 sec 0.013 - -
  1000 2.84 min 0.015 - -
  2000 12.43 min 0.018 - -
  1 51.9 ms 0.546 - -
f: family size 5 51.1 ms 0.183 29.6 min 0.051
10 46.2 ms 0.040 19.6 min 0.017
  20 58.4 ms 0.009 21.7 min 0.042
  1. Trials which did not complete in 24 hours are marked‘-’.