Table 8 SibJoin trials with forbidden allele detection
From: Fast half-sibling population reconstruction: theory and algorithms
Fixed parameter | Parameter | Norm. VI | FP | Recall | Precision | Timeout rate |
|---|---|---|---|---|---|---|
k: number of alleles | 2 | 0.396 | 25.9 | 0.000 | 0.000 | 0.0 |
5 | 0.225 | 12.3 | 0.300 | 0.694 | 0.0 | |
10 | 0.013 | 0.2 | 0.000 | 0.000 | 0.0 | |
15 | 0.014 | 0.0 | - | - | 0.0 | |
20 | 0.003 | 0.0 | - | - | 0.0 | |
m: number of loci | 2 | 0.491 | 23.7 | 0.109 | 0.563 | 0.0 |
5 | 0.150 | 6.6 | 0.355 | 0.537 | 0.0 | |
10 | 0.032 | 1.2 | 0.62 | 0.650 | 0.0 | |
15 | 0.002 | 0.0 | - | - | 0.0 | |
20 | 0.000 | 0.0 | - | - | 0.0 | |
n: population size | 10 | 0.042 | 0.5 | 0.2 | 1 | 0.0 |
50 | 0.098 | 10.2 | 0.340 | 0.679 | 0.0 | |
100 | 0.201 | 41.0 | 0.400 | 0.765 | 0.1 | |
200 | 0.220 | 88.9 | 0.408 | 0.780 | 1.0 | |
f: family size | 1 | 0.527 | 58.5 | 0.317 | 0.778 | 0.7 |
5 | 0.181 | 22.8 | 0.439 | 0.756 | 0.0 | |
10 | 0.038 | 3.6 | 0.313 | 0.477 | 0.0 | |
20 | 0.009 | 1.4 | 0.000 | 0.000 | 0.0 |