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Table 2 All recombination groups that determine the deductions for computing the DCJ-indel distance

From: DCJ-indel and DCJ-substitution distances with distinct operation costs

  Sources Resultants DCJ seq. Δ D C J-λ skip if
P A A A B +B B A B 2 ∙ o -2 −2w  
Q 2A A A B +B B A +B B B 4 ∙ 2o-1n-2 1−4w w 1 2
  2B B A B +A A A +A A B 4 ∙   1−4w  
T A A A B +B B A +A B A B 3 ∙ o-1n-2 1−3w w 1 2
  A A A B +B B B +A B B A 3 ∙   1−3w  
  B B A B +A A A +A B B A 3 ∙   1−3w  
  B B A B +A A B +A B A B 3 ∙   1−3w  
  2B B A B +A A A 2+B B B   1−3w  
  2B B A B +A A B 2+B B A   1−3w  
  2A A A B +B B A 2+A A B   1−3w  
  2A A A B +B B B 2+A A A   1−3w  
S 1 A A A +B B A 2 ∙ o -1 w  
  A A B +B B B 2 ∙  w  
  A A A B +B B A +A B B A  w  
  A A A B +B B B +A B A B  w  
  B B A B +A A A +A B A B  w  
  B B A B +A A B +A B B A  w  
S 2 A B A B +A B B A 2 ∙ n -2 1−2w w 1 2
  A A A B +A B A B +A A A   1−2w  
  A A A B +A B B A +A A B   1−2w  
  B B A B +A B A B +B B B   1−2w  
  B B A B +A B B A +B B A   1−2w  
  A A A B +A A A B A A A +A A B   1−2w  
  B B A B +B B A B B B A +B B B   1−2w  
M 2A B A B +A A B +B B A 4 ∙ 2n-1o-2 2−4w w 1 2
  2A B B A +A A A +B B B 4 ∙   2−4w  
N 1 A B A B +A A B +B B A 2+A B B A n-1o-1 1−2w w 1 2
  A B B A +A A A +B B B 2+A B A B   1−2w  
N 2 2A B A B +A A B 2+A A A n-1n-2 2−3w w 2 3
  2A B A B +B B A 2+B B B   2−3w  
  2A B B A +A A A 2+A A B   2−3w  
  2A B B A +B B B 2+B B A   2−3w