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Table 3 Path recombinations that are used to compute the DCJ-substitution distance

From: DCJ-indel and DCJ-substitution distances with distinct operation costs

  Sources Result. Δσ Δ DCJ Δ DCJ-σ   Sources Result. Δσ Δ DCJ Δ DCJ-σ
       o -1 A A A +B B A B A B +A B A B A B −1 0 w
o -2 A A A B A B +B B A B A B ∙+∙ −2 0 −2w o -1 A A B +B B A B A B +A B B A B A −1 0 w
       o -1 A A A B A B +B B A +A B B A B A −1 0 w
       o -1 A A A B A B +B B B +A B A B A B −1 0 w
o -1 A A A +B B A B A ∙+∙ −1 0 w       
o -1 A A B +B B B A B ∙+∙ −1 0 w n -2 A A A B A B +A A A B A B A A A B A +A A B A B −2 1 1−2w
o -1 A A A B A +B B A ∙+∙ −1 0 w n -2 B B A B A B +B B A B A B B B A B A +B B B A B −2 1 1−2w
o -1 A A B A B +B B B ∙+∙ −1 0 w n -2 A A A B A B +A B A B A B +A A A B A −2 1 1−2w
o -1 A A A B +B B A B A B ∙+∙ −1 0 w n -2 A A A B A B +A B B A B A +A A B A B −2 1 1−2w
o -1 A A A B A B +B B A B ∙+∙ −1 0 w n -2 B B A B A B +A B A B A B +B B B A B −2 1 1−2w
o -1 A A A B +B B A B ∙+∙ −1 0 w n -2 B B A B A B +A B B A B A +B B A B A −2 1 1−2w
o -1 A A A B A +B B A B A B ∙+∙ −1 0 w n -2 A B A B A B +A B B A B A ∙+∙ −2 1 1−2w
o -1 A A B A B +B B A B A B ∙+∙ −1 0 w       
o -1 A A A B A B +B B A B A ∙+∙ −1 0 w n -1 A A A +A B B A B A +A A A B A B −1 1 1−w
o -1 A A A B A B +B B B A B ∙+∙ −1 0 w n -1 A A B +A B A B A B +A A A B A B −1 1 1−w
o -1 A A A +B B A ∙+∙ −1 0 w n -1 B B A +A B A B A B +B B A B A B −1 1 1−w
o -1 A A B +B B B ∙+∙ −1 0 w n -1 B B B +A B B A B A +B B A B A B −1 1 1−w
o -1 A A A +B B A B ∙+∙ −1 0 w n -1 A A A B +A B A B A B +A A A −1 1 1−w
o -1 A A B +B B A B ∙+∙ −1 0 w n -1 A A A B +A B B A B A +A A B −1 1 1−w
o -1 A A A B +B B A ∙+∙ −1 0 w n -1 B B A B +A B B A B A +B B A −1 1 1−w
o -1 A A A B +B B B ∙+∙ −1 0 w n -1 B B A B +A B A B A B +B B B −1 1 1−w
  1. Recombinations of type o - 2 , o - 1 and n - 2 can have Δ DCJ - σ <0. Recombinations of type n - 1 have Δ DCJ - σ 0, but produce an AA or a BB-path with runsABAB orA orB.