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Table 4 All recombination groups that determine the deductions for computing the DCJ-substitution distance

From: DCJ-indel and DCJ-substitution distances with distinct operation costs

  Sources Resultants DCJ seq. Δ D C J-σ skip if
U A A A B A B +B B A B A B 2 ∙ o -2 −2w  
V 2A A A B A B +B B A +B B B 4 ∙ 2o -1 n -2 1−4w w 1 2
  2B B A B A B +A A A +A A B 4 ∙   1−4w  
W A A A B A B +B B A +A B A B A B 3 ∙ o -1 n -2 1−3w w 1 2
  A A A B A B +B B B +A B B A B A 3 ∙   1−3w  
  B B A B A B +A A A +A B B A B A 3 ∙   1−3w  
  B B A B A B +A A B +A B A B A B 3 ∙   1−3w  
  2A A A B A B +B B A 2+A A B A B   1−3w  
  2A A A B A B +B B B > 2+A A A B A   1−3w  
  2B B A B A B +A A A 2+B B B A B   1−3w  
  2B B A B A B +A A B 2+B B A B A   1−3w  
X 1 A A A +B B A B A B +A B A B A B o -1 w  
  A A B +B B A B A B +A B B A B A  w  
  A A A B A B +B B A +A B B A B A  w  
  A A A B A B +B B B +A B A B A B  w  
  A A A B +B B A B A B ∙+∙  w  
  A A A B A B +B B A B ∙+∙  w  
  A A A B +B B A B ∙+∙  w  
  A A A B A +B B A B A B ∙+∙  w  
  A A B A B +B B A B A B ∙+∙  w  
  A A A B A B +B B A B A ∙+∙  w  
  A A A B A B +B B B A B ∙+∙  w  
  A A A +B B A ∙+∙  w  
  A A B +B B B ∙+∙  w  
  A A A +B B A B ∙+∙  w  
  A A B +B B A B ∙+∙  w  
  A A A B +B B A ∙+∙  w  
  A A A B +B B B ∙+∙  w  
  A A A +B B A B A ∙+∙  w  
  A A B +B B B A B ∙+∙  w  
  A A A B A +B B A ∙+∙  w  
  A A B A B +B B B ∙+∙  w  
X 2 A A A B A B +A A A B A B A A A B A +A A B A B n -2 1−2w w 1 2
  B B A B A B +B B A B A B B B A B A +B B B A B   1−2w  
  A A A B A B +A B A B A B +A A A B A   1−2w  
  A A A B A B +A B B A B A +A A B A B   1−2w  
  B B A B A B +A B A B A B +B B B A B   1−2w  
  B B A B A B +A B B A B A +B B A B A   1−2w  
  A B A B A B +A B B A B A ∙+∙   1−2w  
Y 2A B A B A B +A A B +B B A 4 ∙ 2n -1 o -2 2−4w w 1 2
  2A B B A B A +A A A +B B B 4 ∙   2−4w  
Z 1 A B A B A B +A A A B +B B A B A 3 ∙ n -1 o -1 1−2w w 1 2
  A B B A B A +A A A B +B B B A B 3 ∙   1−2w  
  A B B A B A +A A A B A +B B A B 3 ∙   1−2w  
  A B A B A B +A A B A B +B B A B 3 ∙   1−2w  
  A B A B A B +A A B +B B A B A 3 ∙   1−2w  
  A B A B A B +A A B A B +B B A 3 ∙   1−2w  
  A B B A B A +A A A +B B B A B 3 ∙   1−2w  
  A B B A B A +A A A B A +B B B 3 ∙   1−2w  
  A B A B A B +A A B +B B A 2+A B B A B A   1−2w  
  A B B A B A +A A A +B B B 2+A B A B A B   1−2w  
Z 2 2A B A B A B +A A B 2+A A A B A n -1 n -2 2−3w w 2 3
  2A B A B A B +B B A 2+B B B A B   2−3w  
  2A B B A B A +A A A 2+A A B A B   2−3w  
  2A B B A B A +B B B 2+B B A B A   2−3w