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Figure 3 | Algorithms for Molecular Biology

Figure 3

From: Space-efficient and exact de Bruijn graph representation based on a Bloom filter

Figure 3

Data structure sizes for the probabilistic de Bruijn graph. Data structure sizes (Bloom filter, marking structure, and cFP if applicable) for the probabilistic de Bruijn graph with (top right) and without the cFP structure (top left), for an actual dataset (E. coli, k = 23). All plots are in function of the number of bits per k-mer allocated to the Bloom filter. Additionally, the difference is shown (bottom left and bottom right) between a reference assembly made using an exact de Bruijn graph, and an assembly made with each structure.

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