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Table 2 de novo human genome (NA18507) assemblies

From: Space-efficient and exact de Bruijn graph representation based on a Bloom filter

Method Minia C. & B. ABySS SOAPdenovo
Value of k chosen 27 27 27 25
Number of contigs (M) 3.49 7.69 4.35 -
Longest contig (kbp) 18.6 22.0 15.9 -
Contig N50 (bp) 1156 250 870 886
Sum (Gbp) 2.09 1.72 2.10 2.08
Nb of nodes/cores 1/1 1/8 21/168 1/16
Time (wall-clock, h) 23 50 15 33
Memory (sum 5.7 32 336 140
of nodes, GB)     
  1. de novo human genome (NA18507) assemblies reported by our assembler (Minia), Conway and Bromage assembler [9], ABySS [8], and SOAPdenovo [7]. Contigs shorter than 100 bp were discarded. Assemblies were made without any pairing information.