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Table 3 de novo human genome chromosome 14 assemblies

From: Space-efficient and exact de Bruijn graph representation based on a Bloom filter

Assembly Minia   ABySS Velvet
Value of k chosen 47 31 31 31
Number of contigs (k) 48.5 56.1 51.9 45.6
Longest contig (kbp) 28.9 26.5 30.0 27.9
Contig NG50 (kbp) 2.8 1.7 2.0 2.3
Large misassemblies 11 3 20 385
Local misassemblies 25 27 158 867
Coverage (%) 92.4 81.9 82.2 84.4
Unaligned contigs length (kbp) 33.1 13.5 23.6 564.5
  1. de novo human genome chromosome 14 assemblies reported by our assembler (Minia), compared to Velvet and ABySS assemblies from the GAGE benchmark. QUAST was used to evaluate all three assemblers.