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Table 1 Biological RNA sequences examined *

From: Accelerating calculations of RNA secondary structure partition functions using GPUs

Sequence # bases Reference
tRNA RQ2640 75 [28]
tRNA RD0500 76 [28]
tRNA RA7680 76 [28]
tRNA RD0260 77 [28]
tRNA RR1664 77 [28]
Candida albicans 5S rRNA 114 [29]
Escherichia coli 5S rRNA 120 [30]
P546 folding domain of Tetrahymenathermophilia group I intron 155 [31]
Bacillus stearothermophilus SRP RNA 268 [32]
3’ UTR of Bombyx mori R2 element with flanking vector sequence 300 [33]
Tetrahymena thermophilia group I intron 433 [30]
Saccharomyces cerevisiae A5 group II intron 632 [34]
Escherichia coli small subunit rRNA 1542 [30]
Escherichia coli large subunit rRNA 2904 [29]
human ICAM-1 mRNA 2986 [35]
HIV-1 NL43 genome (GenBank: AF324493) 9709 [36]
  1. *28 random sequences of length 10–10,000 were also examined.