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Table 5 PDBTM training

From: Probabilistic grammatical model for helix‐helix contact site classification

Trained for

Using property

 

Accessibility

vdW volume

c1

0.56 (0.58)

0.44 (0.47)

c2

0.45 (0.49)

0.60 (0.62)

c3

0.44 (0.48)

0.59 (0.65)

c4

0.56 (0.63)

0.32 (0.45)

  1. Average AUC ROC of combined grammars trained in PDBTM150NR in helix‐helix contact fragments classification in WDG150NR. Average AUC ROC of the best performing single grammars out of 3 trained grammars for each class‐property case is shown in parentheses. Bold fonts indicate the best performance for a given helix contact site class.