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Table 2 Comparison of enrichments between the MKL, ANAT and Steiner tree solutions

From: A minimum-labeling approach for reconstructing protein networks across multiple conditions

Biological process

MKL

ANAT

Steiner

Influenza infection

   

Intracellular receptor mediated

6.5e-10

2.1e-04

1.2e-05

signaling pathway (GO:0030522)

   

Apoptosis (GO:0006915)

3.7e-04

1.7e-04

3.3e-04

Viral reproduction (GO:0016032)

2.5e-03

>0.01

>0.01

ER export

   

Vesicle-mediated transport

1.2e-05

7.6e-04

8.5e-05

(GO:0016192)

   

Cellular membrane organization

1.4e-05

6.6e-05

1.6e-05

(GO:0016044)

   

Intracellular protein transport

9.2e-06

7.8e-06

2.3e-05

(GO:0006886)

   
  1. This table compares the hypergeometric p-values indicating the significance of the overlap between each of the predicted subnetworks (considering non-input genes only) and the gene sets of GO categories that are of relevance to the investigated biological processes.
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Algorithms for Molecular Biology

ISSN: 1748-7188