Table 2 CpG hypo-methylation in tissue-specific lncRNA promoters
From: Mutual enrichment in ranked lists and the statistical assessment of position weight matrix motifs
Tissue | Mutual enrichment between GC content and tissue-specificity | Mutual enrichment between hypo-methylation and tissue-specificity | |
|---|---|---|---|
Normal/subnormal cells | Cancer cells | ||
Thyroid | 3.89e-31 | No methylation data | No methylation data |
Prostate | 5.76e-22 | 4.16e-11 (PrEC) | 0.002 (LNCaP) |
Adrenal | 5.46e-20 | No methylation data | No methylation data |
Brain | 1.57e-14 | 1.21e-8 (NH-A) | 5.55e-5 (U87) |
Ovary | 8.80e-12 | No methylation data | 0.0085 (ovcar-3) |
Lymph node | 3.64e-6 | No methylation data | No methylation data |
Adipose | 9.25e-6 | No methylation data | No methylation data |
Foreskin | 2.25e-5 | 0.72 (BJ) | No methylation data |
Breast | 4.40e-5 | 5.08e-5 (HMEC) | 8.45e-5 (MCF7) |
2.0e-10 (MCF10A) | 0.0065 (T-47D) | ||
Kidney | 6.34e-5 | 1.56e-5 (HEK293) | No methylation data |
White blood cell | 3.78e-4 | 0.6 (GM12878) | 0.21 (Jurkat) |
Placenta | 0.011 | No methylation data | No methylation data |
Colon | 0.012 | No methylation data | 1.0 (Caco-2) |
Skeletal muscle | 0.04 | 0.34 (SKMC) | No methylation data |
Lung | 0.33 | No methylation data | No methylation data |
Heart | 1.0 | 1.0 (HCM) | No methylation data |
1.0 (HCF) | |||
Liver | 1.0 | 1.0 (Hepatocytes) | 1.0 (HepG2) |
Testes | 1.0 | No methylation data | 1.0 (NT2-D1) |
Lung fibroblasts | 1.0 | 1.0 (IMR90) | No methylation data |
| Â | Â | 1.0 (AGO4450) | Â |