Skip to main content

Advertisement

Table 1 Evaluation of MSARC variants

From: MSARC: Multiple sequence alignment by residue clustering

MSARC variant   SP/TC scores
Alt. indels Weighted Multilevel   All RV11 RV12 RV20 RV30 RV40 RV50
yes yes no   87 . 6 57 . 1 69 . 9 46.3 94 . 5 85.7 92 . 5 39.2 83 . 7 47.2 93 . 2 62.3 88.7 51.6
yes yes yes   87 . 6 57.0 69.7 46 . 5 94 . 5 85 . 8 92 . 5 39.0 83.6 46.9 93 . 2 61.8 88.7 51 . 9
yes no no   87.5 56.6 69.3 45.5 94.4 85.6 92 . 5 39.6 83 . 7 47 . 6 93.0 61.2 88.6 49.6
yes no yes   87.5 56.6 69.6 45.6 94 . 5 85 . 8 92 . 5 39.3 83.4 47.0 93.1 61.4 88.4 49.6
no yes no   87.5 57.0 69.2 45.6 94.4 85.7 92 . 5 39.5 83.5 47.1 93 . 2 62.2 89 . 0 51 . 9
no yes yes   87.5 57 . 1 69.2 46.2 94.4 85.6 92 . 5 39.2 83 . 7 47.7 93 . 2 62 . 4 88.7 51.6
no no no   87.5 56.6 69.4 45.6 94 . 5 85.7 92 . 5 39 . 7 83.5 46.9 93.0 61.3 88.5 49.7
no no yes   87.5 56.7 69.5 45.7 94.4 85.7 92 . 5 39.1 83.5 47.0 93.1 61.7 88.6 49.7
  1. All the combinations of the following options are evaluated: (dis-)allowing for neighboring insertions and deletions in pairwise alignments, (not) weighting sequence pairs in consistency transformation and (not) using multilevel scheme in residue clustering. Entries show the mean SP and TC scores for each alignment algorithm on the whole BAliBASE 3.0 dataset and each of its series. All scores are multiplied by 100. Best results in each column are shown in bold.