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Table 2 The results of binding sites prediction of GRNAs in sensitivity and positive predictive value on the datasets[12, 14] in comparison to inRNAs, IntaRNA, RNAup and RactIP

From: RNA-RNA interaction prediction using genetic algorithm

Sensitivity PPV
RNA-RNA pairs GRNAs inRNAs IntaRNA RNAup RactIP GRNAs inRNAs IntaRNA RNAup RactIP
Tar-Tar* 100 100 100 100 81.5 100 83.3 83.3 83.3 57.9
R1inv-R2inv 100 100 100 100 100 100 77.8 100 77.8 100
DIS-DIS 100 100 100 100 75 100 100 100 100 78.3
CopA-CopT 89.47 88.9 100 55.6 100 80.95 82.8 39.1 65.2 100
IncRNA54-RepZ 71.44 100 73.8 75 100 100 88.9 85 85.7 83.3
DsrA-Rpos 73.08 80.8 80.8 80.8 65.4 100 77.8 77.8 77.8 73.9
GcvB-argT 87.5 95 95 90 95 100 86.4 95 94.7 100
GcvB-dppA 94.12 100 100 100 94.1 100 85 58.6 45.9 59.3
GcvB-gltI 91.67 75 0 0 100 95.65 50 0 0 100
GcvB-livK 70.83 54 54.2 54.2 95.5 89.47 57 56.5 56.5 95.5
GcvB-livJ 95.45 63.4 95.5 95.5 95.8 95.45 82.4 95.5 95.5 95.8
GcvB-oppA 90.91 100 100 100 100 100 73.3 95.7 95.7 100
GcvB-STM4351 72 76 76 88 88 100 100 90.5 95.7 100
IstR-tisAB 69.44 72.2 87.9 66.7 77.8 100 100 96 100 100
MicA-ompA 93.75 100 100 100 87.5 100 100 100 100 87.5
MicA-lamB 82.61 100 100 82.6 56.5 90.48 100 82.1 70.4 86.7
MicC-ompC 90.91 100 100 72.7 72.7 100 100 53.7 41 88.9
MicF-ompF 100 96 96 80 83.3 100 96 96 95.2 76.9
OxyS-fhlA 80 81.3 50 37.5 56.3 86.96 100 100 100 81.8
RyhB-sdhD 58.82 61.8 58.8 79.4 82.4 95.24 95.5 100 79.4 82.4
RyhB-sodB 100 100 100 100 100 100 100 81.8 90 39.1
SgrS-ptsG 60.87 56.6 73.9 73.9 83.9 87.5 76.5 100 100 100
Spot42-galK 61.36 43.2 40.9 52.3 68.2 87.1 76 64.3 52.3 69.8
Average 84.1 84.5 81.9 77.6 84.7 96.03 86.5 80.5 78.4 85.1