Table 3 The results of binding sites prediction of GRNAs in F-measure on the datasets[12, 14] in comparison to inRNAs, IntaRNA, RNAup and RactIP
From: RNA-RNA interaction prediction using genetic algorithm
RNA-RNA pairs | GRNAs | inRNAs | IntaRNA | RNAup | RactIP |
|---|---|---|---|---|---|
Tar-Tar* | 100 | 90.9 | 90.9 | 90.9 | 67.7 |
R1inv-R2inv | 100 | 87.5 | 100 | 87.5 | 100 |
DIS-DIS | 100 | 100 | 100 | 100 | 76.6 |
CopA-CopT | 85 | 85.7 | 56.2 | 60 | 100 |
IncRNA54-RepZ | 82.92 | 94.1 | 79 | 80 | 90.9 |
DsrA-Rpos | 84.44 | 79.3 | 79.3 | 79.3 | 69.4 |
GcvB-argT | 93.33 | 90.5 | 95 | 92.3 | 97.4 |
GcvB-dppA | 96.97 | 91.9 | 73.9 | 62.9 | 72.2 |
GcvB-gltI | 93.62 | 60 | 0 | 0 | 100 |
GcvB-livK | 76.07 | 55.5 | 55.3 | 55.3 | 95.5 |
GcvB-livJ | 95.45 | 71.7 | 95.5 | 95.5 | 95.8 |
GcvB-oppA | 95.24 | 84.6 | 97.8 | 97.8 | 100 |
GcvB-STM4351 | 83.72 | 86.4 | 82.6 | 91.7 | 93.6 |
IstR-tisAB | 81.96 | 83.9 | 91.8 | 80 | 78.5 |
MicA-ompA | 96.77 | 100 | 100 | 100 | 87.5 |
MicA-lamB | 86.36 | 100 | 90.2 | 76 | 68.4 |
MicC-ompC | 95.24 | 100 | 69.9 | 52.4 | 80 |
MicF-ompF | 100 | 96 | 96 | 86.9 | 80 |
OxyS-fhlA | 83.33 | 89.7 | 66.7 | 54.5 | 66.7 |
RyhB-sdhD | 72.73 | 75 | 74.1 | 79.4 | 82.4 |
RyhB-sodB | 100 | 100 | 90 | 94.7 | 56.3 |
SgrS-ptsG | 71.79 | 65.1 | 85 | 85 | 85 |
Spot42-galK | 72 | 55.1 | 50 | 52.3 | 69 |
Average | 89 | 84.5 | 79.1 | 76.3 | 83.6 |