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Table 3 The results of binding sites prediction of GRNAs in F-measure on the datasets[12, 14] in comparison to inRNAs, IntaRNA, RNAup and RactIP

From: RNA-RNA interaction prediction using genetic algorithm

RNA-RNA pairs GRNAs inRNAs IntaRNA RNAup RactIP
Tar-Tar* 100 90.9 90.9 90.9 67.7
R1inv-R2inv 100 87.5 100 87.5 100
DIS-DIS 100 100 100 100 76.6
CopA-CopT 85 85.7 56.2 60 100
IncRNA54-RepZ 82.92 94.1 79 80 90.9
DsrA-Rpos 84.44 79.3 79.3 79.3 69.4
GcvB-argT 93.33 90.5 95 92.3 97.4
GcvB-dppA 96.97 91.9 73.9 62.9 72.2
GcvB-gltI 93.62 60 0 0 100
GcvB-livK 76.07 55.5 55.3 55.3 95.5
GcvB-livJ 95.45 71.7 95.5 95.5 95.8
GcvB-oppA 95.24 84.6 97.8 97.8 100
GcvB-STM4351 83.72 86.4 82.6 91.7 93.6
IstR-tisAB 81.96 83.9 91.8 80 78.5
MicA-ompA 96.77 100 100 100 87.5
MicA-lamB 86.36 100 90.2 76 68.4
MicC-ompC 95.24 100 69.9 52.4 80
MicF-ompF 100 96 96 86.9 80
OxyS-fhlA 83.33 89.7 66.7 54.5 66.7
RyhB-sdhD 72.73 75 74.1 79.4 82.4
RyhB-sodB 100 100 90 94.7 56.3
SgrS-ptsG 71.79 65.1 85 85 85
Spot42-galK 72 55.1 50 52.3 69
Average 89 84.5 79.1 76.3 83.6