Figure 3
From: Graph-distance distribution of the Boltzmann ensemble of RNA secondary structures
Comparison between the base-pair probabilities and the distance importance I 6,42 ( e ). The base-pair probabilities (upper-right-triangle) and the distance importances I6,42(e) (lower-left-triangle) of backbone edges and base pairs between 6(U) and 42(U) of DAse ribozyme (Figure 2) are computed at temperatures 37°C and 50°C, repectively. The size of the squares is proportional to the probability/value. The region covered by the between 6(U) and 42(U) is annotated by a red rectangle. For ease of comparison, backbone edges are added to the base-pair probability matrix.