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Table 1 Graph-distance of intron CG16979-RA_intron_0_0_chr3L_15569803 from Drosophila melanogaster (dm3)

From: Graph-distance distribution of the Boltzmann ensemble of RNA secondary structures

1st

6th

10th

Distance = 7

Distance = 6

Distance = 14

a

b

c

  1. The intron is extended at the 5’ and 3’ end with 100 bases. The graph-distance is computed between i = 101(G) and j=159(G) (annotated in the figure). The corresponding shortest paths are highlighted in yellow. The structures (a), (b) and (c) are the most stable structures considering the sub-ensembles which are the sets of structures of graph-distance 7, 6 and 14, respectively. The graph distances 7, 6 and 14 are the 1st, 6th and 10th most favourable graph-distances considering Boltzmann facor.
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Algorithms for Molecular Biology

ISSN: 1748-7188