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Table 2 Graph-distance of the genomic RNA of human Coronavirus 229E computed from a concatenation of position 1-576 and 25188-25688

From: Graph-distance distribution of the Boltzmann ensemble of RNA secondary structures

1st

6th

8th

Distance = 14

Distance = 5

Distance = 35

a

b

c

  1. The graph-distance is measured from the most 5’ end to the most 3’ end of the sequence. The RNA secondary structure brings the leader transcription regulation site (L-TRS) in close spatial proximity with the body transcription regulation site (B-TRS). The structures (a), (b) and (c) are the most stable structures considering the sub-ensembles which are the sets of structures of graph-distance 14, 5 and 35, respectively. These are the 1st, 6th and 8th most favoured graph-distances in the Boltzmann ensemble.
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Algorithms for Molecular Biology

ISSN: 1748-7188