Table 2 Evaluation of realignments of human-dog alignments (human chromosome 21)
From: Probabilistic approaches to alignment with tandem repeats
Clean | Detected errors | ||||||
|---|---|---|---|---|---|---|---|
Algorithm | transcripts | Start | Stop | 5’splice | 3’splice | Nonsense | Frameshifts |
Out of (dataset size) | 2207 | 2190 | 2180 | 18898 | 18898 | ||
3-state Viterbi | 730 | 292 | 459 | 236 | 401 | 174 | 309 |
UCSC alignments | 743 | 294 | 427 | 239 | 415 | 173 | 348 |
SFF posterior | 750 | 288 | 425 | 251 | 384 | 174 | 358 |
SFF marginalized | 682 | 292 | 425 | 251 | 384 | 174 | 438 |
SFF block | 714 | 292 | 432 | 254 | 388 | 169 | 392 |