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Table 1 Multiple sequence alignment programs used in this study

From: Assessing the efficiency of multiple sequence alignment programs

Software Download link Main algorithm
CLUSTALW v2.0.10 http://www.clustal.org/download/current/ Progressive
CLUSTAL O. v1.2.0 http://www.clustal.org/omega Hidden Markov Model
DIALIGN-TX v1.0.2 http://dialign-tx.gobics.de/download Consistency
MAFFT v6.714b http://mafft.cbrc.jp/alignment/software/ Fast Fourier T./Iterative/Consistency
MUSCLE v3.8.31 http://www.drive5.com/muscle/downloads.htm Iterative
POA v2 http://sourceforge.net/projects/poamsa Graphs
Probalign v1.4 http://cs.njit.edu/usman/probalign/ Partition Function/Consistency
Probcons v1.12 http://probcons.stanford.edu/download.html Hidden Markov Model/Consistency
T-Coffee v8.99 http://www.tcoffee.org/Projects_home_page/t_coffee_home_page.html Consistency (multi-core usage capable)