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Table 1 Multiple sequence alignment programs used in this study

From: Assessing the efficiency of multiple sequence alignment programs

Software Download link Main algorithm
CLUSTALW v2.0.10 Progressive
CLUSTAL O. v1.2.0 Hidden Markov Model
DIALIGN-TX v1.0.2 Consistency
MAFFT v6.714b Fast Fourier T./Iterative/Consistency
MUSCLE v3.8.31 Iterative
POA v2 Graphs
Probalign v1.4 Partition Function/Consistency
Probcons v1.12 Hidden Markov Model/Consistency
T-Coffee v8.99 Consistency (multi-core usage capable)