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Table 3 Sensitivity and specificity of TFBS recognition for various thresholds and probability models

From: Analysis of pattern overlaps and exact computation of P-values of pattern occurrences numbers: case of Hidden Markov Models

  Number of occurrences P -value
   Bernoulli Markov1 Markov2 HMM3 HMM4
Threshold 1 0.5 0.5 0.5 0.5 0.8
Sensitivity 97.11% 97.11% 97.11% 97.11% 97.11% 97.11%
Specificity 62.33% 62.56% 62.56% 62.56% 62.78 % 62.33%
Threshold 2 0.0189 0.01966 0.0215 0.0232 0.02619
Sensitivity 69.11% 69.11% 69.11% 69.11% 69.11% 69.22%
Specificity 87.33% 92.33% 92.33% 92% 92% 92.22%
Threshold 3 0.00135 0.00135 0.00157 0.00219 0.003
Sensitivity 32.33% 32.44% 32.44% 32.44% 32.44% 32.33%
Specificity 95.33% 98.11% 98% 98% 97.56% 97.78%
  1. See details in the text of the paper.