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Table 5 Terms highly enriched in BicPAM’s biclusters

From: BicPAM: Pattern-based biclustering for biomedical data analysis

Dataset ID Terms Bicluster with bestp-value Genes
dlblc Dl1 translational elongation; cytosolic part; translational initiation 4.49E-5 81
  Dl2 Golgi apparatus; MHC protein complex 5.40E-5 83
  Dl3 defense response; receptor activity; single organism signaling; vacuole; cell communication 4.91-5 162
  Dl4 immune response; response to interferon-gamma 1.06E-4 58
  Dl5 immune system process 1.27E-4 52
  Dl6 response to interferon-gamma; cellular response to chemical stimulus; response to cytokine stimulus 0.001 60
  Dl7 membrane-enclosed lumen; cell division; cell cycle process 2.92E-12 81
  Dl8 small molecule binding; catalytic activity; cell cycle process 6.14E-8 108
hughes H1 mitochondrion organization; organellar ribosome; mitochondrial matrix; mitochondrial translation 2.70E-39 416
  H2 cell periphery; cell wall constituent; oxidoreductase activity; cell wall organization; sexual sporulation 1.73E-4 370
  H3 ribonucleoprotein complex biogenesis; nucleus 3.61E-30 426
  H4 cellular amino acid metabolic/biosynthetic process; carboxylic acid metabolic/biosynthetic process 1.3E-25 581
  H5 organonitrogen compound metabolic process; sulfur compound metabolic process 1.62E-4 504
  H6 macromolecular complex; intracell. non-membrane-bounded organelle; membrane-enclosed lumen 4.80E-14 512
gasch G1 nitrogen compound metabolic proc.; carboxylic/organic amino acid processes; structural cytoskeleton 1.84E-16 434
  G2 cellular carbohydrate metabolic process; cytoplasm 2.01E-7 265
  G3 generation of precursor metabolites and energy; tricarboxylic acid cycle 1.16E-14 954
  G4 endomembrane system; retrotransposon nucleocapsid; pore; viral procapsid maturation 4.34E-6 102
  G5 nucleolus; ncRNA metabolic process 1.03E-61 611
  G6 intracell. non-membrane-bounded organelle; structural molecule activity 5.33E-76 293
  G7 cytosolic part; ribosomal subunit 1.61E-88 460
  G8 membrane-enclosed lumen; nuclear lumen; intracell. organelle lumen 1.17E-47 263
  G9 mitochondrion organization; mitochondrial part; cytoplasmic part; protein complex biogenesis 2.06E-26 592
  G10 cellular response to oxidative stress; generation of precursor metabolites and energy 2.37E-4 296
  G11 binding; nuclear part; preribosome 2.87E-11 508
  G12 cellular process involved in reproduction 0.001 435
  G13 macromolecular complex; cell part; structural molecule activity 6.05E-29 1442
  G14 vacuolar transport; chromosome 5.09E-7 606
  G15 regulation of cellular (macromolecule) biosynthetic process; protein modification process 2.28E-13 1019
  G16 organic substance catabolic process; carbohydrate metabolic process; cytoplasm 1.02E-15 648
  G17 ribonucleoprotein complex biogenesis (general) 1.08E-94 784