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Table 6 Illustrative set of biclusters with different properties and heightened biological relevance ( p -values after Bonferroni correction)

From: BicPAM: Pattern-based biclustering for biomedical data analysis

Dataset ID Pattern Items Closing options
  B1 FAABFFF A-F Merging with tight overlapping
dlblc B2 AAABCA A-C Extensions allowed (with tight merging)
  B3 AAA/../EEE A-E Reducing with high homogeneity
  B4 EEECEE A-E Merging allowed
hughes B5 CCDCBCBCC A-E Merging with relaxed overlapping
  B6 AAAAA/../G..G A-G Merging with tight overlapping
gasch B7 AAAGGGA A-G Merging with tight overlapping
  B8 AAABACCCAA A-E Merging allowed
ID Type Genes Conds p −values <0.01 p −values [0.01,0.05] Best p-value
B1 constant 83 7 41 21 1.97E-10
B2 constant 153 8 9 1 2.27E-12
B3 multiplicative 119 5 5 18 4.12E-8
B4 constant 581 6 12 7 1.31E-25
B5 constant 654 10 16 4 1.31E-17
B6 additive 476 6 12 10 1.92E-6
B7 multiplicative 483 7 57 10 1.24E-81
B8 additive 521 10 17 5 4.57E-12