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Table 8 Analysis of TFs of the putative regulatory modules given by the BicPAM’s biclusters provided in Table 5 for the human genome ( dlblc dataset) and the yeast genome ( gasch dataset)

From: BicPAM: Pattern-based biclustering for biomedical data analysis

Dataset

Bic.ID(Table5)

Highly enriched TFs

dlblc

Dl1

BCL11A, LZTS1, GTF2I, HCLS1, HDAC1, MBD4, MEF2B, NCOA3, STAT6

 

Dl2

ANP32A, HCLS1, IRF1, MNDA, NCOA1, RUNX3, STAT1, TRIM22, TRIP10

 

Dl3

BCL3, TRIM22, ANP32A, ARID5B, CEBPB, CREG1, IRF1, PFDN5, STAT1

 

Dl4

ANP32A, IRF1, NCOA1, STAT1, TRIM22

 

Dl5

CREG1, IRF1, TRIM22, ANP32A, STAT1

 

Dl6

ANP32A, IRF1, NCOA1, STAT1, TRIM22

 

Dl7

BCL6, BCL6B, HIf1A, ILF2, POU2AF1, SERTAD1, TCF3

 

Dl8

DR1, DRAP1, HIf1A, ILF2, NCOA3, SERTAD1, TMF1, ZNFN1A1

gasch

G1

Gcn4p, Sfp1p, Ace2p, Tec1p, Ste12p, Ash1p

 

G2

Sfp1p, Msn2p, Bas1p, Tec1p, Sok2p, Abf1p, Ash1p, Cst6p

 

G3

Sfp1p, Tec1p, Ste12p, Msn2p, Bas1p, Sok2p, Msn4p, Gcn4p

 

G4

Snf6p, Tec1p, Ste12p, Rap1p, Sin4p, Abf1p, Snf2p, Ash1p

 

G5

Sfp1p, Ace2p, Cst6p, Tup1p, Msn2p, Spt10p, Spt20p

 

G6

Hsf1p, Spt23p, Mga2p, Sfp1p, Spt10p, Msn2p, Gcr1p, Gcn4p

 

G7

Sfp1p, Swi5p, Tup1p, Spt10p, Spt20p, Gcr1p, Sin3p, Mga2p

 

G8

Sfp1p, Swi5p, Cst6p, Tup1p, Spt20p, Ash1p, Spt10p

 

G9

Yap1p, Ace2p, Sfp1p, Msn2p, Ash1p, Msn4p, Abf1p

 

G10

Sfp1p, Msn2p, Msn4p, Cst6p, Abf1p, Sok2p, Bas1p

 

G11

Snf6p, Tup1p, Snf2p, Cst6p, Sin4p, Rap1p, Swi3p, Hap2p

 

G12

Yap1p, Tec1p, Msn2p, Msn4p, Ste12p, Sok2p

 

G13

Snf6p, Tup1p, Abf1p, Snf2p, Cst6p, Sin4p

 

G14

Sfp1p, Tec1p, Ste12p, Bas1p, Sok2p, Yrm1p

 

G15

Ace2p, Sfp1p, Tec1p, Ste12p, Ash1p, Bas1p, Gcn4p, Sok2p

 

G16

Cin5p, Gcn4p, Msn4p, Sfp1p, Msn2p, Tec1p, Ste12p, Sok2p

 

G17

Sfp1p, Ace2p, Cst6p, Snf6p, Rap1p, Tup1p, Spt10p, Swi5p