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Table 8 Analysis of TFs of the putative regulatory modules given by the BicPAM’s biclusters provided in Table 5 for the human genome ( dlblc dataset) and the yeast genome ( gasch dataset)

From: BicPAM: Pattern-based biclustering for biomedical data analysis

Dataset Bic.ID(Table5) Highly enriched TFs
dlblc Dl1 BCL11A, LZTS1, GTF2I, HCLS1, HDAC1, MBD4, MEF2B, NCOA3, STAT6
  Dl2 ANP32A, HCLS1, IRF1, MNDA, NCOA1, RUNX3, STAT1, TRIM22, TRIP10
  Dl3 BCL3, TRIM22, ANP32A, ARID5B, CEBPB, CREG1, IRF1, PFDN5, STAT1
  Dl4 ANP32A, IRF1, NCOA1, STAT1, TRIM22
  Dl5 CREG1, IRF1, TRIM22, ANP32A, STAT1
  Dl6 ANP32A, IRF1, NCOA1, STAT1, TRIM22
  Dl7 BCL6, BCL6B, HIf1A, ILF2, POU2AF1, SERTAD1, TCF3
  Dl8 DR1, DRAP1, HIf1A, ILF2, NCOA3, SERTAD1, TMF1, ZNFN1A1
gasch G1 Gcn4p, Sfp1p, Ace2p, Tec1p, Ste12p, Ash1p
  G2 Sfp1p, Msn2p, Bas1p, Tec1p, Sok2p, Abf1p, Ash1p, Cst6p
  G3 Sfp1p, Tec1p, Ste12p, Msn2p, Bas1p, Sok2p, Msn4p, Gcn4p
  G4 Snf6p, Tec1p, Ste12p, Rap1p, Sin4p, Abf1p, Snf2p, Ash1p
  G5 Sfp1p, Ace2p, Cst6p, Tup1p, Msn2p, Spt10p, Spt20p
  G6 Hsf1p, Spt23p, Mga2p, Sfp1p, Spt10p, Msn2p, Gcr1p, Gcn4p
  G7 Sfp1p, Swi5p, Tup1p, Spt10p, Spt20p, Gcr1p, Sin3p, Mga2p
  G8 Sfp1p, Swi5p, Cst6p, Tup1p, Spt20p, Ash1p, Spt10p
  G9 Yap1p, Ace2p, Sfp1p, Msn2p, Ash1p, Msn4p, Abf1p
  G10 Sfp1p, Msn2p, Msn4p, Cst6p, Abf1p, Sok2p, Bas1p
  G11 Snf6p, Tup1p, Snf2p, Cst6p, Sin4p, Rap1p, Swi3p, Hap2p
  G12 Yap1p, Tec1p, Msn2p, Msn4p, Ste12p, Sok2p
  G13 Snf6p, Tup1p, Abf1p, Snf2p, Cst6p, Sin4p
  G14 Sfp1p, Tec1p, Ste12p, Bas1p, Sok2p, Yrm1p
  G15 Ace2p, Sfp1p, Tec1p, Ste12p, Ash1p, Bas1p, Gcn4p, Sok2p
  G16 Cin5p, Gcn4p, Msn4p, Sfp1p, Msn2p, Tec1p, Ste12p, Sok2p
  G17 Sfp1p, Ace2p, Cst6p, Snf6p, Rap1p, Tup1p, Spt10p, Swi5p