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Table 6 Runtime and number of solved LPs for single and double gene knockouts

From: Double and multiple knockout simulations for genome-scale metabolic network reconstructions

Model

 

Step

  

gko

dgko

E. coli iJO1366

LPs

719

263844

 

time

1.2

3h 49min

E. coli iAF1260

LPs

516

229498

 

time

8.6

2h 55min

S. cerevisiae iND750

LPs

1323

308145

 

time

6.4

37min 36s

M. tuberculosis iNJ661

LPs

175

77346

 

time

1.2

15min 59s

S. aureus iSB619

LPs

49

38689

 

time

0.68

9min 42s

H. pylori iIT341

LPs

27

19348

 

time

0.24

1min 52s

E. coli textbook

LPs

2

2023

 

time

0.04

4.4s

  1. Times are given in seconds if not specified otherwise.