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Table 4 Recall rates for clustering of mRNA simulated reads(10000 reads, k =3, 4 clusters) for different measures, error rates and read length

From: Clustering of reads with alignment-free measures and quality values

  read length = 300   read length = 400
  (a)   (b)
Distance No errors 3 % 5 % 10 %   No Errors 3 % 5 % 10 %
  4 clusters   4 clusters
\(D^{*}_{2}\) 0,680 0,667 0,658 0,625   0,713 0,700 0,697 0,672
\(D^{*q}_{2}\) AQP 0,680 0,672 0,673 0,650   0,713 0,712 0,710 0,693
\(D^{*q}_{2}\) AQP q-red 0,680 0,671 0,673 0,650   0,713 0,711 0,711 0,694
\(D^{*q}_{2}\) AWP 0,616 0,610 0,608 0,601   0,643 0,636 0,632 0,623
\(D^{*q}_{2}\) AWP q-red 0,616 0,610 0,607 0,602   0,643 0,635 0,631 0,622
L 2 0,610 0,600 0,602 0,581   0,638 0,630 0,624 0,614
KL 0,617 0,604 0,601 0,577   0,649 0,632 0,628 0,618
Symm, KL 0,613 0,603 0,599 0,576   0,647 0,632 0,627 0,616
D 2 0,601 0,593 0,588 0,575   0,626 0,618 0,615 0,604
  1. Best results are in bold.