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Table 5 Comparison of assembly with and without clustering preprocess ( k =3, 2 clusters)

From: Clustering of reads with alignment-free measures and quality values

Distance Mapped contigs N50 Number of contigs Genome coverage
No Clustering 93.55% 112 22823 0,828
\(D^{*q}_{2}\) AQP q-red 94.13% 141 29421 0,920
\(D^{*}_{2}\) 93.97% 138 28701 0,914
L 2 94.24% 135 28297 0,904
KL 94.19% 135 28171 0,903
Symm, KL 94.27% 134 27999 0,902
D 2 94.33% 134 28019 0,903
  1. The assembly with Velvet is evaluated in terms of mapped contigs, N50, number of contigs and genome coverage. The dataset used is SRR017901 (23.5M bases, 10x coverage) that contains reads of Zymomonas mobilis. Best results are in bold.