Table 5 Comparison of assembly with and without clustering preprocess ( k =3, 2 clusters)
From: Clustering of reads with alignment-free measures and quality values
Distance | Mapped contigs | N50 | Number of contigs | Genome coverage |
|---|---|---|---|---|
No Clustering | 93.55% | 112 | 22823 | 0,828 |
\(D^{*q}_{2}\) AQP q-red | 94.13% | 141 | 29421 | 0,920 |
\(D^{*}_{2}\) | 93.97% | 138 | 28701 | 0,914 |
L 2 | 94.24% | 135 | 28297 | 0,904 |
KL | 94.19% | 135 | 28171 | 0,903 |
Symm, KL | 94.27% | 134 | 27999 | 0,902 |
D 2 | 94.33% | 134 | 28019 | 0,903 |