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Table 6 Comparison of assembly with and without clustering preprocess ( k =3, 3 clusters)

From: Clustering of reads with alignment-free measures and quality values

Distance Mapped contigs N50 Number of contigs Genome coverage
No Clustering 96.97% 122 16724 0.729
\(D^{*q}_{2}\) AQP q-red 98.49% 175 41086 0.994
\(D^{*}_{2}\) 98.38% 174 40156 0.994
L 2 98.16% 175 36798 0.986
KL 98.28% 178 37717 0.990
Simm, KL 98.30% 182 37217 0.990
D 2 98.22% 186 34866 0.987
  1. The assembly with Velvet is evaluated in terms of mapped contigs, N50, number of contigs and genome coverage. The dataset used is SRR023794 (117MBases) that contains reads of Helicobacter Pylori. Best results are in bold.