Table 6 Comparison of assembly with and without clustering preprocess ( k =3, 3 clusters)
From: Clustering of reads with alignment-free measures and quality values
Distance | Mapped contigs | N50 | Number of contigs | Genome coverage |
|---|---|---|---|---|
No Clustering | 96.97% | 122 | 16724 | 0.729 |
\(D^{*q}_{2}\) AQP q-red | 98.49% | 175 | 41086 | 0.994 |
\(D^{*}_{2}\) | 98.38% | 174 | 40156 | 0.994 |
L 2 | 98.16% | 175 | 36798 | 0.986 |
KL | 98.28% | 178 | 37717 | 0.990 |
Simm, KL | 98.30% | 182 | 37217 | 0.990 |
D 2 | 98.22% | 186 | 34866 | 0.987 |