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Table 7 Metagenomic reads classification of Helicobacter pylori ( SRR023794 ), Zymomonas mobilis ( SRR017901 ), E.coli ( FXAWNEV04 ) and Legionella pneumophila ( ERR164429 )

From: Clustering of reads with alignment-free measures and quality values

Distance 4 cluster 3 cluster
\(D^{*}_{2}\) 0.79782297 0.79129356
\(D^{*q}_{2}\) AQP q-red 0.79775189 0.76920676
\(D^{*q}_{2}\) AWP q-red 0.80050234 0.82603989
L 2 0.64335292 0.73455525
KL 0.78663484 0.80525234
Simm, KL 0.77196713 0.79216786
D 2 0.73917085 0.77062424
  1. The recall rates for different measures with k = 4 and 3 and 4 clusters. Best results are in bold.