Table 2 Simulated datasets of short reads
From: A two-phase binning algorithm using l-mer frequency on groups of non-overlapping reads
Samples | No. of | Phylogenetic | Ratio | No. of |
|---|---|---|---|---|
species | distance | reads | ||
S1 | 2 | Species | 1:1 | 96367 |
S2 | 2 | Species | 1:1 | 195339 |
S3 | 2 | Order | 1:1 | 338725 |
S4 | 2 | Phylum | 1:1 | 375302 |
S5 | 3 | Species and | 1:1:1 | 325400 |
Family | ||||
S6 | 3 | Phylum and | 3:2:1 | 713388 |
Kingdom | ||||
S7 | 5 | Order, Order | 1:1:1:4:4 | 1653550 |
Genus, Order | ||||
S8 | 5 | Genus, Order | 3:5:7:9:11 | 456224 |
Order, Order | ||||
S9 | 15 | various distances | 1:1:1:1:1: | 2234168 |
2:2:2:2:2: | ||||
3:3:3:3:3 | ||||
S10 | 30 | various distances | 4:4:4:4:4: | 4990632 |
6:6:6:6:6: | ||||
7:7:7:7:7: | ||||
8:8:8:8:8: | ||||
9:9:9:9:9: | ||||
10:10:10:10:10 | ||||
L1 | 2 | Class | 1:1 | 176688 |
L2 | 2 | Class | 1:2 | 259568 |
L3 | 2 | Class | 1:3 | 342448 |
L4 | 2 | Class | 1:4 | 425328 |
L5 | 2 | Class | 1:5 | 508209 |
L6 | 2 | Class | 1:6 | 591089 |