TY - CHAP AU - Sankoff, D. PY - 1992 DA - 1992// TI - Edit distance for genome comparison based on non-local operations BT - Proc. of CPM 1992. LNCS, vol. 644 PB - Springer Verlag CY - Heidelberg ID - Sankoff1992 ER - TY - CHAP AU - Bergeron, A. AU - Mixtacki, J. AU - Stoye, J. PY - 2006 DA - 2006// TI - A unifying view of genome rearrangements BT - Proc. of WABI 2006. LNBI, vol. 4175 PB - Springer Verlag CY - Heidelberg ID - Bergeron2006 ER - TY - STD TI - Bafna V, Pevzner P. Genome rearrangements and sorting by reversals. In: Proc. of FOCS 1993: 1993. p. 148–57. ID - ref3 ER - TY - STD TI - Hannenhalli S, Pevzner P. Transforming men into mice (polynomial algorithm for genomic distance problem). In: Proc. of FOCS 1995: 1995. p. 581–92. ID - ref4 ER - TY - JOUR AU - Yancopoulos, S. AU - Attie, O. AU - Friedberg, R. PY - 2005 DA - 2005// TI - Efficient sorting of genomic permutations by translocation, inversion and block interchanges JO - Bioinformatics VL - 21 UR - https://doi.org/10.1093/bioinformatics/bti535 DO - 10.1093/bioinformatics/bti535 ID - Yancopoulos2005 ER - TY - JOUR AU - Sankoff, D. PY - 1999 DA - 1999// TI - Genome rearrangement with gene families JO - Bioinformatics VL - 15 UR - https://doi.org/10.1093/bioinformatics/15.11.909 DO - 10.1093/bioinformatics/15.11.909 ID - Sankoff1999 ER - TY - CHAP AU - Bryant, D. ED - Sankoff, D. ED - Nadeau, J. H. PY - 2000 DA - 2000// TI - The complexity of calculating exemplar distances BT - Comparative Genomics PB - Kluwer Academic Publishers CY - Dortrecht ID - Bryant2000 ER - TY - JOUR AU - Bulteau, L. AU - Jiang, M. PY - 2013 DA - 2013// TI - Inapproximability of (1,2)-exemplar distance JO - IEEE/ACM Trans Comput Biol Bioinf. VL - 10 UR - https://doi.org/10.1109/TCBB.2012.144 DO - 10.1109/TCBB.2012.144 ID - Bulteau2013 ER - TY - JOUR AU - Angibaud, S. AU - Fertin, G. AU - Rusu, I. AU - Thévenin, A. AU - Vialette, S. PY - 2009 DA - 2009// TI - On the approximability of comparing genomes with duplicates JO - J Graph Algorithms Appl. VL - 13 UR - https://doi.org/10.7155/jgaa.00175 DO - 10.7155/jgaa.00175 ID - Angibaud2009 ER - TY - CHAP AU - Shao, M. AU - Lin, Y. AU - Moret, B. PY - 2014 DA - 2014// TI - An exact algorithm to compute the DCJ distance for genomes with duplicate genes BT - Proc. of RECOMB 2014. LNBI, vol. 8394 PB - Springer Verlag CY - Heidelberg ID - Shao2014 ER - TY - JOUR AU - Dörr, D. AU - Thévenin, A. AU - Stoye, J. PY - 2012 DA - 2012// TI - Gene family assignment-free comparative genomics JO - BMC Bioinformatics VL - 13 UR - https://doi.org/10.1186/1471-2105-13-S19-S3 DO - 10.1186/1471-2105-13-S19-S3 ID - Dörr2012 ER - TY - CHAP AU - Braga, M. D. V. AU - Chauve, C. AU - Dörr, D. AU - Jahn, K. AU - Stoye, J. AU - Thévenin, A. ED - Chauve, C. ED - El-Mabrouk, N. ED - Tannier, E. PY - 2013 DA - 2013// TI - The potential of family-free genome comparison BT - Models and Algorithms for Genome Evolution, Chap. 13 PB - Springer CY - London ID - Braga2013 ER - TY - CHAP AU - Martinez, F. V. AU - Feijão, P. AU - Braga, M. D. V. AU - Stoye, J. PY - 2014 DA - 2014// TI - On the family-free DCJ distance BT - Proc. of WABI 2014. LNBI, vol. 8701 PB - Springer Verlag CY - Heidelberg ID - Martinez2014 ER - TY - JOUR AU - Braga, M. D. V. AU - Stoye, J. PY - 2010 DA - 2010// TI - The solution space of sorting by DCJ JO - J Comp Biol. VL - 17 UR - https://doi.org/10.1089/cmb.2010.0109 DO - 10.1089/cmb.2010.0109 ID - Braga2010 ER - TY - JOUR AU - Feijão, P. AU - Meidanis, J. PY - 2011 DA - 2011// JO - IEEE/ACM Trans Comput Biol Bioinf. VL - 8 UR - https://doi.org/10.1109/TCBB.2011.34 DO - 10.1109/TCBB.2011.34 ID - Feijão2011 ER - TY - BOOK AU - Ausiello, G. AU - Protasi, M. AU - Marchetti-Spaccamela, A. AU - Gambosi, G. AU - Crescenzi, P. AU - Kann, V. PY - 1999 DA - 1999// TI - Complexity and approximation: combinatorial optimization problems and their approximability properties PB - Springer CY - Heidelberg UR - https://doi.org/10.1007/978-3-642-58412-1 DO - 10.1007/978-3-642-58412-1 ID - Ausiello1999 ER - TY - JOUR AU - Dalquen, D. A. AU - Anisimova, M. AU - Gonnet, G. H. AU - Dessimoz, C. PY - 2012 DA - 2012// TI - ALF–a simulation framework for genome evolution JO - Mol Biol Evol. VL - 29 UR - https://doi.org/10.1093/molbev/msr268 DO - 10.1093/molbev/msr268 ID - Dalquen2012 ER - TY - JOUR AU - Lechner, M. AU - Hernandez-Rosales, M. AU - Doerr, D. AU - Wieseke, N. AU - Thévenin, A. AU - Stoye, J. PY - 2014 DA - 2014// TI - Orthology detection combining clustering and synteny for very large datasets JO - PLOS ONE VL - 9 UR - https://doi.org/10.1371/journal.pone.0105015 DO - 10.1371/journal.pone.0105015 ID - Lechner2014 ER -