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Table 3 Complex detection statistics for the process networks

From: A graph modification approach for finding core–periphery structures in protein interaction networks

 

Cell-cycle

Transcription

Translation

 

D

core %

comp %

extra %

D

core %

comp %

extra %

D

core %

comp %

extra %

SCE

4

93/100

100/100

71/ 67

8

87/ 88

100/100

73/ 85

4

89/100

96/ 96

50/ 50

ME

5

89/100

99/100

90/ 89

11

89/100

93/100

76/ 79

4

89/100

95/ 96

55/ 64

SCAN

4

87/ 91

98/100

100/100

8

81/ 84

100/100

96/100

0

—/—

—/—

—/—

Luo

5

76/ 81

100/100

100/100

6

89/ 87

100/100

100/100

4

84/ 92

96/ 96

72/ 73

CE

5

80/ 87

94/100

40/ 0

9

87/ 91

94/100

89/100

4

84/ 92

90/ 94

55/ 60

  1. Here, D is the number of detected complexes, core% is among the detected complexes the mean/median percentage of core vertices that are in this complex, comp% is the mean/median percentage of complex proteins that are in the cluster, and extra% is the mean/median percentage of periphery proteins that are not in the cluster.