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Table 3 Complex detection statistics for the process networks

From: A graph modification approach for finding core–periphery structures in protein interaction networks

  Cell-cycle Transcription Translation
  D core % comp % extra % D core % comp % extra % D core % comp % extra %
SCE 4 93/100 100/100 71/ 67 8 87/ 88 100/100 73/ 85 4 89/100 96/ 96 50/ 50
ME 5 89/100 99/100 90/ 89 11 89/100 93/100 76/ 79 4 89/100 95/ 96 55/ 64
SCAN 4 87/ 91 98/100 100/100 8 81/ 84 100/100 96/100 0 —/— —/— —/—
Luo 5 76/ 81 100/100 100/100 6 89/ 87 100/100 100/100 4 84/ 92 96/ 96 72/ 73
CE 5 80/ 87 94/100 40/ 0 9 87/ 91 94/100 89/100 4 84/ 92 90/ 94 55/ 60
  1. Here, D is the number of detected complexes, core% is among the detected complexes the mean/median percentage of core vertices that are in this complex, comp% is the mean/median percentage of complex proteins that are in the cluster, and extra% is the mean/median percentage of periphery proteins that are not in the cluster.
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Algorithms for Molecular Biology

ISSN: 1748-7188