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Table 3 Running time (millisecond) comparison between network-based ranking algorithms on different functional similarity protein complex networks

From: A novel method for identifying disease associated protein complexes based on functional similarity protein complex networks

 

NBH (A)

RWR (B)

PRINCE (C)

Speedup (B/A)

Speedup (C/A)

SharedProteinComNet

2

79

81

41.8

42.6

SharedGOTermComNet

110

3369

3428

30.6

31.2

SharedPPIComNet

115

2544

2497

22.2

21.8

Average

31.5

31.9

  1. –Platform: Intel Core i3 3240 CPU 3.4GHz, 4GB RAM.
  2. –Average running time for ranking all candidate protein complexes on functional similarity protein complex networks of a disease phenotype.
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Algorithms for Molecular Biology

ISSN: 1748-7188