Table 1 Properties of datasets used
ID | References | Technology | Insert length (bp) | Read length (bp) | Coverage | Error rate (%) |
|---|---|---|---|---|---|---|
Staphylococus aureus (2.87 Mbp) | ||||||
SA1 | [24] | Illumina | 180 | 101 | 90 | 3 |
SA2 | [24] | Illumina | 3,500 | 37 | 90 | 3 |
Escherichia coli (4.64 Mbp) | ||||||
EC1 | [6] | Illumina | 300 | 151 | 400 | 0.75 |
EC2 | [6] | PacBio | 4,000 | 30 | 13 | |
EC3 | Simulated | Illumina | 37,000 | 75 | 0.5 | 4 |
Human chromosome 14 (88.29 Mbp) | ||||||
H1 | [24] | Illumina | 150 | 101 | 42 | 1 |
H2 | [24] | Illumina | 2,500 | 101 | 26 | 3 |
H3 | [24] | Illumina | 35,000 | 76 | 1.3 | 4.5 |