Assembler | Number of scaffolds | Longest scaffold (kb) | Longest scaffold corr. (kb) | N50 (kb) | Err. | N50 corr. (kb) | LAP |
---|---|---|---|---|---|---|---|
Staphylococus aureus, read sets SA1, SA2 | |||||||
GAML | 28 | 1,191 | 1,191 | 514 | 0 | 514 | −23.45 |
Allpaths-LG | 12 | 1,435 | 1,435 | 1,092 | 0 | 1,092 | −25.02 |
SOAPdenovo | 99 | 518 | 518 | 332 | 0 | 332 | −25.03 |
Velvet | 45 | 958 | 532 | 762 | 17 | 126 | −25.34 |
Bambus2 | 17 | 1,426 | 1,426 | 1,084 | 0 | 1,084 | −25.73 |
MSR-CA | 17 | 2,411 | 1,343 | 2,414 | 3 | 1,022 | −26.26 |
ABySS | 246 | 125 | 125 | 34 | 1 | 28 | −29.43 |
Cons. Velvet* | 219 | 95 | 95 | 31 | 0 | 31 | −30.82 |
SGA | 456 | 286 | 286 | 208 | 1 | 208 | −31.80 |
Escherichia coli, read sets EC1, EC2 | |||||||
PacbioToCA | 55 | 1,533 | 1,533 | 957 | 0 | 957 | −33.86 |
GAML | 29 | 1,283 | 1,283 | 653 | 0 | 653 | −33.91 |
Cerulean | 21 | 1,991 | 1,991 | 694 | 0 | 694 | −34.18 |
AHA | 54 | 477 | 477 | 213 | 5 | 194 | −34.52 |
Cons. Velvet* | 383 | 80 | 80 | 21 | 0 | 21 | −36.02 |
Escherichia coli, read sets EC1, EC2, EC3 | |||||||
GAML | 4 | 4,662 | 4,661 | 4,662 | 3 | 4,661 | −60.38 |
Celera | 19 | 4,635 | 2,085 | 4,635 | 19 | 2,085 | −61.47 |
Cons. Velvet* | 383 | 80 | 80 | 21 | 0 | 21 | −72.03 |