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Table 8 Comparison in terms of biological relevance between each pair of conserved protein complexes predicted by UEDAMAlignKnownComplex and UEDAMAlignCoach with respect to various values of parameter l and r

From: Detecting conserved protein complexes using a dividing-and-matching algorithm and unequally lenient criteria for network comparison

Methods Yeast-fly
Conserved pairs \(Avg\_mixed\) \(Avg\_yeast\) \(Avg\_fly\) \(Avg\_intra\)
\(UEDAMAlignCoach\_l=2\_r=2\) 725 3.4729 4.4809 2.5707 3.1565
\(UEDAMAlignCoach\_l=2\_r=3\) 762 3.4142 4.5086 2.6173 3.1450
\(UEDAMAlignCoach\_l=3\_r=2\) 785 3.4591 4.4847 2.6750 3.2003
\(UEDAMAlignCoach\_l=3\_r=3\) 785 3.4140 4.4826 2.6646 3.1738
\(UEDAMAlignKnowComplex\_l=2\_r=2\) 148 4.5041 7.0767 3.7421 3.9779
\(UEDAMAlignKnowComplex\_l=2\_r=3\) 149 4.3174 7.0879 3.6295 3.8850
\(UEDAMAlignKnowComplex\_l=3\_r=2\) 148 4.4140 7.0767 3.7057 3.9537
\(UEDAMAlignKnowComplex\_l=3\_r=3\) 149 4.3174 7.0879 3.6295 3.8850
Methods Human-fly
Conserved pairs \(Avg\_mixed\) \(Avg\_human\) \(Avg\_fly\) \(Avg\_intra\)
\(UEDAMAlignCoach\_l=2\_r=2\) 1.538 3.5807 4.0532 3.3599 3.4388
\(UEDAMAlignCoach\_l=2\_r=3\) 1.420 3.6842 4.1654 3.4326 3.5286
\(UEDAMAlignCoach\_l=3\_r=2\) 1.421 3.6766 4.1517 3.4409 3.5189
\(UEDAMAlignCoach\_l=3\_r=3\) 1.430 3.6762 4.1506 3.4260 3.5201
\(UEDAMAlignKnowComplex\_l=2\_r=2\) 515 4.8490 6.1202 4.4131 4.5720
\(UEDAMAlignKnowComplex\_l=2\_r=3\) 521 4.8482 6.1193 4.4186 4.5767
\(UEDAMAlignKnowComplex\_l=3\_r=2\) 522 4.8567 6.1345 4.4277 4.5760
\(UEDAMAlignKnowComplex\_l=3\_r=3\) 524 4.8436 6.1261 4.4142 4.5696