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Table 1 Results of index generation

From: HIA: a genome mapper using hybrid index-based sequence alignment

Aligner Options Time Memory (GB) Size (GB)
HIA -t 1 -q 14 165 20.32 12.63
HIA -t 12 -q 14 28 20.47 12.63
BWA   65 4.53 5.40
bowtie2   99 5.35 4.10
soap2   55 3.39 5.90
seqAlto -I 0 genome.fa 28 33 37.99 22.40
seqAlto -I 1 genome.fa 22 12 13.19 5.52
  1. Time measurement is elapsed time (minute). Memory is the peak memory for the index construction. Size is the sum of all generated files