Table 1 Results of index generation
From: HIA: a genome mapper using hybrid index-based sequence alignment
Aligner | Options | Time | Memory (GB) | Size (GB) |
|---|---|---|---|---|
HIA | -t 1 -q 14 | 165 | 20.32 | 12.63 |
HIA | -t 12 -q 14 | 28 | 20.47 | 12.63 |
BWA | Â | 65 | 4.53 | 5.40 |
bowtie2 | Â | 99 | 5.35 | 4.10 |
soap2 | Â | 55 | 3.39 | 5.90 |
seqAlto | -I 0 genome.fa 28 | 33 | 37.99 | 22.40 |
seqAlto | -I 1 genome.fa 22 | 12 | 13.19 | 5.52 |