Table 5 Results of the multithreading tests
From: HIA: a genome mapper using hybrid index-based sequence alignment
Aligner | Time (6 threads) | Time (12 threads) |
|---|---|---|
HIA | 932 | 505 |
BWA | 4006 | 2586 |
BWA MEM | 1162 | 645 |
bowtie2 | 1180 | 789 |
soap2 | 2217 | 1616 |
seqAlto | 3945 | 2077 |