Table 1 Time and space performance of SparseMFEFold compared to RNAfold
From: Sparse RNA folding revisited: space-efficient minimum free energy structure prediction
Run-time (s) | Memory: resident set size (kB) | |||
|---|---|---|---|---|
RNAfold | SparseMFEFold | RNAfold | SparseMFEFold | |
Minimum | 16.9 | 15.37 | 31,800 | 5932 |
Median | 29.7 | 22.89 | 42,828 | 7262 |
Maximum | 89.9 | 57.36 | 88,548 | 9048 |