Table 1 Default synthetic data benchmarks for network data analyzes
From: BicNET: Flexible module discovery in large-scale biological networks using biclustering
| Network nodes (10 % density) | Network density (2000 nodes) | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| 200 | 500 | 1000 | 2000 | 10,000 | 1 % | 5 % | 10 % | 25 % | |
| Nr. of hidden modules | 5 | 10 | 15 | 20 | 30 | 3 | 5 | 10 | 20 |
| Nr. of nodes per module | [20, 30] | [30, 40] | [40, 50] | [50, 70] | [100, 140] | [50, 70] | [50, 70] | [50, 70] | [50, 70] |
| % interactions in modules | 19.5 | 12.2 | 7.6 | 4.5 | 1.1 | 22.5 | 9.0 | 4.5 | 2.3 |