Table 7 Sets of modules with meaningful overlapping areas (satisfying the in-between plaid assumption [21])
From: BicNET: Flexible module discovery in large-scale biological networks using biclustering
ID | Modules with meaningful overlapping regions | Pattern | \(\sharp\)Nodes \(|I|\times |J|\) | % Overlapping interactions |
|---|---|---|---|---|
G6 | G7 from Table 6 (orders preserved in overlapping regions before cumulative effect) | Order | 42 × 8 | 21 |
G8: tRNA re-export from nucleus; nuclear mRNA surveillance of mRNP export | Constant | 12 × 10 | 62 | |
G9: More general module (background) including cellular responses to pH | Constant | 41 × 6 | 16 | |
S4 | S2 from Table 6 (satisfying the relaxed additive model proposed in [21]) | Constant | 80 × 18 | 42 |
S7: Telomere maintenance; translocation; protein import into nucleous | Constant | 104 × 20 | 37 | |
S8: Response to ionizing radiation; ribose phosphate metabolic process | Constant | 59 × 31 | 45 | |
S9: Positive regulation of mitochondrial translation in response to stress | Constant | 50 × 20 | 89 |