Circular sequence comparison: algorithms and applications

Table 3 RF distances between the tree obtained from the NW(o) and those obtained from NW(r), cNW, hSW, and saCSCr

Dataset \(<\alpha ,\gamma ,\theta ,\kappa ,\omega>\)	NW(r)	hSW
<12, 2500, 0.05, 0.06, 0.04>	16	0
<12, 2500, 0.20, 0.06, 0.04>	12	0
<12, 2500, 0.35, 0.06, 0.04>	4	0
<25, 2500, 0.05, 0.06, 0.04>	44	0
<25, 2500, 0.20, 0.06, 0.04>	24	0
<25, 2500, 0.35, 0.06, 0.04>	16	0
<50, 2500, 0.05, 0.06, 0.04>	86	6
<50, 2500, 0.20, 0.06, 0.04>	84	0
<50, 2500, 0.35, 0.06, 0.04>	56	0

The number of sequences in the dataset is denoted by \(\alpha\); \(\gamma\) denotes their lengths; \(\theta\) denotes the substitution rate; \(\kappa\) and \(\omega\) denote the relative insertion and deletion rates, respectively

ISSN: 1748-7188